Basic Information
Locus ID:
gene-BS78_04G126700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 17109053 | 17132435 | + | gene-BS78_04G126700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.75 | 50,853.21 Da | 47.69 | 66.16 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 280 | 344 | 3.00356E-18 | - |
| CDD | cd16872 | ARID_HMGB9-like | 69 | 154 | 1.4116E-38 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 280 | 347 | 2.1E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 72 | 154 | 2.4E-18 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 268 | 348 | 1.07E-19 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 64 | 166 | 1.09E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 58 | 175 | 2.7E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 263 | 355 | 2.4E-20 | IPR036910 |
| SMART | SM00501 | bright_3 | 68 | 159 | 7.9E-26 | IPR001606 |
| SMART | SM00398 | hmgende2 | 279 | 348 | 2.2E-18 | IPR009071 |
| SMART | SM01014 | ARID_2 | 64 | 154 | 2.3E-25 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 67 | 158 | 25.145044 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 280 | 347 | 14.58709 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 202 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_002453801.1 | high mobility group B protein 15 [Sorghum bicolor] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | C5Y176 | ARID domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3004G143300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology