Basic Information
Locus ID:
gene-BS78_04G115700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 11871088 | 11873913 | - | gene-BS78_04G115700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.05 | 53,631.81 Da | 49.78 | 74.84 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 178 | 461 | 7.3371E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 287 | 322 | 5.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 426 | 461 | 7.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 338 | 376 | 0.0077 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 207 | 263 | 8.7E-6 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 163 | 463 | 7.61E-60 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 115 | 464 | 4.4E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 199 | 238 | 9.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 241 | 279 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 322 | 8.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 422 | 461 | 8.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 379 | 419 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 376 | 0.0029 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 429 | 462 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 429 | 462 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 206 | 247 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 290 | 324 | 11.787407 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 206 | 243 | 8.808332 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 290 | 331 | 14.819399 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 309 | 323 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 448 | 462 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 60 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_034577419.1 | cell division cycle 20.2, cofactor of APC complex-like [Setaria viridis] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6WG04 | ANAPC4_WD40 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G008300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology