Basic Information
Locus ID:
gene-BS78_04G115200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
CHASE domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 11821473 | 11825070 | + | gene-BS78_04G115200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 109,989.51 Da | 42.60 | 93.04 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 651 | 920 | 1.28511E-83 | - |
| Pfam | PF03924 | CHASE domain | 122 | 303 | 4.8E-31 | IPR006189 |
| Pfam | PF00069 | Protein kinase domain | 645 | 917 | 1.2E-50 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 629 | 929 | 2.56E-75 | IPR011009 |
| Gene3D | G3DSA:3.30.450.350 | CHASE domain | 122 | 341 | 3.8E-59 | IPR042240 |
| Gene3D | G3DSA:6.10.250.1190 | - | 69 | 121 | 6.0E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 728 | 929 | 2.3E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 630 | 727 | 3.7E-32 | - |
| SMART | SM00220 | serkin_6 | 645 | 920 | 3.3E-35 | IPR000719 |
| SMART | SM01079 | CHASE_2 | 118 | 308 | 2.9E-22 | IPR006189 |
| ProSiteProfiles | PS50839 | CHASE domain profile. | 118 | 335 | 31.850395 | IPR006189 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 645 | 930 | 38.788654 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 771 | 783 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27320.1 | histidine kinase 3. Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. | 0 |
| RefSeq | XP_025799967.1 | probable kinase CHARK [Panicum hallii] | 0 |
| Q2QRN7 | Probable kinase CHARK OS=Oryza sativa subsp. japonica OX=39947 GN=CHARK PE=2 SV=1 | 0 | |
| TrEMBL | A2ZK79 | CHASE domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38233 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2178, AH03.790 |
| Poaceae | Oryza coarctata | 1 | Oco23G006040 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g26940.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G114800, gene-BS78_04G115200 |