Basic Information
Locus ID:
gene-BS78_04G114800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
CHASE domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 11775540 | 11781698 | + | gene-BS78_04G114800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 124,690.61 Da | 40.67 | 91.41 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 786 | 1055 | 1.70429E-82 | - |
| Pfam | PF00069 | Protein kinase domain | 780 | 1052 | 3.0E-50 | IPR000719 |
| Pfam | PF03924 | CHASE domain | 149 | 327 | 2.8E-31 | IPR006189 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 764 | 1064 | 2.16E-75 | IPR011009 |
| SUPERFAMILY | SSF47384 | Homodimeric domain of signal transducing histidine kinase | 401 | 475 | 1.28E-5 | IPR036097 |
| Gene3D | G3DSA:3.30.450.350 | CHASE domain | 150 | 366 | 2.5E-62 | IPR042240 |
| Gene3D | G3DSA:6.10.250.1190 | - | 98 | 149 | 2.5E-22 | - |
| Gene3D | G3DSA:1.10.287.130 | - | 390 | 477 | 3.8E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 765 | 862 | 4.4E-32 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 863 | 1064 | 2.2E-55 | - |
| SMART | SM00388 | HisKA_10 | 415 | 480 | 4.8E-5 | IPR003661 |
| SMART | SM01079 | CHASE_2 | 146 | 332 | 1.2E-21 | IPR006189 |
| SMART | SM00220 | serkin_6 | 780 | 1055 | 1.9E-35 | IPR000719 |
| ProSiteProfiles | PS50839 | CHASE domain profile. | 146 | 359 | 31.440153 | IPR006189 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 780 | 1065 | 38.831059 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 906 | 918 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27320.1 | histidine kinase 3. Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. | 0 |
| RefSeq | XP_015620760.1 | probable kinase CHARK [Oryza sativa Japonica Group] | 0 |
| Q2QRN7 | Probable kinase CHARK OS=Oryza sativa subsp. japonica OX=39947 GN=CHARK PE=2 SV=1 | 0 | |
| TrEMBL | A2ZK79 | CHASE domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38233 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2178, AH03.790 |
| Poaceae | Oryza coarctata | 1 | Oco23G006040 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g26940.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G114800, gene-BS78_04G115200 |