Basic Information
Locus ID:
gene-BS78_04G109400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 10839171 | 10839836 | + | gene-BS78_04G109400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 22,941.14 Da | 48.40 | 89.28 | 0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 146 | 189 | 3.29827E-15 | - |
| Pfam | PF13639 | Ring finger domain | 147 | 189 | 2.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 146 | 196 | 2.28E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 131 | 195 | 2.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 147 | 188 | 5.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 147 | 189 | 11.987676 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 221 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15975.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004954585.1 | RING-H2 finger protein ATL75 [Setaria italica] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | K3YZ45 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101757091 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology