Basic Information
Locus ID:
gene-BS78_04G104500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 9924565 | 9925116 | - | gene-BS78_04G104500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.51 | 18,714.45 Da | 43.58 | 98.25 | 0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 124 | 167 | 1.86788E-16 | - |
| Pfam | PF13639 | Ring finger domain | 124 | 167 | 1.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 173 | 1.09E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 172 | 1.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 125 | 166 | 2.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 125 | 167 | 11.397556 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039786789.1 | RING-H2 finger protein ATL8-like [Panicum virgatum] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A811PPF0 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS31606 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology