Basic Information
Locus ID:
gene-BS78_04G104200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 9917366 | 9918077 | - | gene-BS78_04G104200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 21,218.31 Da | 52.58 | 86.71 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 141 | 183 | 4.03421E-19 | - |
| Pfam | PF13639 | Ring finger domain | 141 | 183 | 9.0E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 189 | 1.87E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 189 | 1.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 141 | 182 | 5.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 183 | 12.740079 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 210 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025796764.1 | RING-H2 finger protein ATL39-like [Panicum hallii] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2S3GMX4 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G106800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology