Basic Information
Locus ID:
gene-BS78_04G103600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 9867341 | 9873746 | + | gene-BS78_04G103600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 26,855.67 Da | 61.40 | 84.40 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 157 | 199 | 4.1939E-15 | - |
| Pfam | PF13639 | Ring finger domain | 157 | 199 | 9.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 205 | 1.01E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 203 | 7.9E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 157 | 198 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 199 | 12.031935 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 103 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_004954602.1 | RING-H2 finger protein ATL3 [Setaria italica] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | K3Z0B7 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101764784 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH07.1022, BH07.1136, BH07.1141, CH07.914, CH07.920 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0107690, gene-QOZ80_2AG0107720 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0575080.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022027, gene-QYE76_048206 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G103600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013640, Chr0G033280, Chr15G023360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G344800 |
| Poaceae | Triticum aestivum | 1 | TraesCS6A02G172100.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb238470_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34205, nbis-gene-53142 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12513 |