Basic Information
Locus ID:
gene-BS78_04G093700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8234109 | 8236519 | + | gene-BS78_04G093700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 22,403.37 Da | 59.42 | 81.74 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 156 | 197 | 1.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 199 | 1.41E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 202 | 2.5E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 197 | 6.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 11.81064 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_002451813.1 | uncharacterized protein LOC8073796 [Sorghum bicolor] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A811PSE8 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS31712 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH07.910, CH07.793 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G093700 |
| Poaceae | Zea mays | 1 | Zm00001eb239580_P001 |