Basic Information
Locus ID:
gene-BS78_04G083400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 6968053 | 6970815 | + | gene-BS78_04G083400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 40,309.78 Da | 77.63 | 61.53 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 160 | 198 | 6.3E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 152 | 223 | 4.71E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 229 | 4.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 160 | 198 | 2.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 160 | 199 | 12.076194 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 175 | 184 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 118 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27330.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_039801689.1 | E3 ubiquitin-protein ligase TRIM7-like [Panicum virgatum] | 0 |
| Q8HXH0 | LON peptidase N-terminal domain and RING finger protein 3 OS=Macaca fascicularis OX=9541 GN=LONRF3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0UIH5 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG171900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40431 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18683 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013850 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g151380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42714, Sbi_jg45338 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11201 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002600 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35071, Sgl40456 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002210, gene:ENSEOMG00000013596 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0003320 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30023800, pistato.v30024120 |
| Apiaceae | Apium graveolens | 1 | Ag7G01970 |
| Arecaceae | Cocos nucifera | 1 | scaffold000154G000350 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719650 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1159.V1.1, AsparagusV1_09.210.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G09959 |
| Brassicaceae | Brassica nigra | 1 | BniB04g007330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1945 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2018 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g04410 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2281 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.206 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027809 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G35296 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3202, BH05.3241, CH05.3312 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0387070 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0614710.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_050102 |
| Poaceae | Oryza coarctata | 2 | Oco23G004660, Oco24G004130 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g16690.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G083400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0205328, Pt_Chr0205393 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G029490, Chr03G020470, Chr04G020560, Chr06G021890 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G545900 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG053370 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G304300.1, TraesCS6B02G332400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb111820_P002, Zm00001eb331370_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12397 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25692 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.913, evm.TU.LG21.576 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g07470, gene.Posoc01g23690 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1983, evm.TU.Scaffold_6_RagTag.75 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-14888, nbisL1-mrna-2449, nbisL1-mrna-2527 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19348 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3134, nbisL1-mrna-67 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002137, Maker00007211 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11924, nbisL1-mrna-11998 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17516 |
| Salicaceae | Populus euphratica | 2 | populus_peu01176, populus_peu37547 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605574, gene-LOC132622049 |
| Solanaceae | Solanum chilense | 2 | SOLCI000009100, SOLCI004252800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009516, gene-LOC107011320 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14441 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3526, TC03G0535 |
| Zosteraceae | Zostera marina | 1 | Zosma02g22990.v3.1 |