Basic Information
Locus ID:
gene-BS78_04G081900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Galactose oxidase, central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 6848361 | 6850648 | - | gene-BS78_04G081900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 54,416.10 Da | 58.85 | 72.31 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 305 | 350 | 1.5E-8 | IPR006652 |
| Pfam | PF00646 | F-box domain | 153 | 185 | 2.4E-6 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 223 | 474 | 3.79E-39 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 148 | 201 | 6.93E-6 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 217 | 498 | 2.4E-35 | IPR015915 |
| SMART | SM00256 | fbox_2 | 156 | 196 | 0.0043 | IPR001810 |
| SMART | SM00612 | kelc_smart | 267 | 316 | 7.8E-4 | IPR006652 |
| SMART | SM00612 | kelc_smart | 317 | 364 | 0.01 | IPR006652 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 92 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80440.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_039788725.1 | F-box/kelch-repeat protein At1g80440-like [Panicum virgatum] | 0 |
| Q9M8L2 | F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7F3H9 | F-box domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G081400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology