Basic Information
Locus ID:
gene-BS78_04G077100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 6300478 | 6303604 | - | gene-BS78_04G077100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 68,462.85 Da | 46.44 | 104.65 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 272 | 295 | 0.071 | IPR001611 |
| Pfam | PF00646 | F-box domain | 63 | 103 | 6.1E-4 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 379 | 401 | 1.1 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 221 | 244 | 0.0012 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 302 | 421 | 2.35E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 59 | 99 | 2.09E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 186 | 646 | 2.55E-42 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 453 | 649 | 3.4E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 298 | 452 | 1.2E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 57 | 297 | 1.3E-32 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 221 | 246 | 2.5E-8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 273 | 298 | 0.035 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 591 | 616 | 84.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 459 | 484 | 36.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 166 | 194 | 560.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 379 | 404 | 0.0036 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 195 | 220 | 0.48 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 247 | 272 | 0.44 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 565 | 589 | 1.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 512 | 537 | 0.18 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 485 | 510 | 0.094 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 353 | 378 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 539 | 564 | 0.013 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_004951542.1 | EIN3-binding F-box protein 1 [Setaria italica] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5VY32 | EIN3-binding F-box protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0008956 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology