Basic Information
Locus ID:
gene-BS78_04G073000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5968666 | 5976351 | + | gene-BS78_04G073000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 82,360.93 Da | 50.48 | 86.97 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 429 | 643 | 6.7E-31 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 119 | 178 | 4.1E-10 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 97 | 112 | 0.2 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 403 | 703 | 4.29E-61 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 64 | 244 | 7.78E-38 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 386 | 504 | 1.8E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 258 | 2.3E-45 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 505 | 718 | 2.8E-45 | - |
| SMART | SM00369 | LRR_typ_2 | 190 | 216 | 92.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 142 | 165 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 166 | 189 | 240.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 96 | 120 | 51.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 427 | 708 | 29.050329 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 433 | 455 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 284 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_025794912.1 | protein STRUBBELIG-RECEPTOR FAMILY 8-like [Panicum hallii] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3GMJ0 | Protein kinase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G071800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology