Basic Information
Locus ID:
gene-BS78_04G072700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5932948 | 5937767 | - | gene-BS78_04G072700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 106,209.93 Da | 37.53 | 111.29 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 88 | 147 | 3.7E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 159 | 219 | 1.2E-8 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 304 | 325 | 1.2 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 543 | 602 | 1.2E-9 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 400 | 459 | 7.7E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 16 | 75 | 5.9E-7 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 318 | 616 | 5.18E-57 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 630 | 859 | 9.86E-40 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 19 | 388 | 2.82E-74 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 401 | 492 | 2.6E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 251 | 400 | 1.1E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 617 | 862 | 5.0E-52 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 250 | 8.2E-76 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 493 | 616 | 5.1E-35 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 110 | 131 | 51.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 38 | 59 | 330.0 | - |
| SMART | SM00369 | LRR_typ_2 | 230 | 254 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 182 | 205 | 27.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 182 | 208 | 330.0 | - |
| SMART | SM00369 | LRR_typ_2 | 541 | 565 | 4.4 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 230 | 256 | 75.0 | - |
| SMART | SM00369 | LRR_typ_2 | 302 | 326 | 6.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 798 | 822 | 83.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 722 | 746 | 76.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 697 | 721 | 65.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 134 | 158 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 110 | 133 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 589 | 613 | 5.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 38 | 62 | 110.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 86 | 101 | 730.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 302 | 328 | 320.0 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 41 | 54 | 3.7E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 110 | 123 | 3.7E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025806643.1 | leucine-rich repeat receptor protein kinase MSP1-like [Panicum hallii] | 0 |
| Q8RZV7 | Leucine-rich repeat receptor protein kinase MSP1 OS=Oryza sativa subsp. japonica OX=39947 GN=MSP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3GM20 | Protein kinase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G071600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg24300 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12615, gene_19149 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007495, Ah014783 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g064650 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg19058, Sbi_jg37488, Sbi_jg59033, Sbi_jg63595 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg23294, Seu_jg5331 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009952, GOSA_00012860 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl02451, Sgl07604, Sgl22180, Sgl22182, Sgl27423 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011933, gene:ENSEOMG00000012383 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0024440, CQ.Regalona.r1.3BG0025270 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30163380, pistato.v30168000, pistato.v30273040 |
| Apiaceae | Apium graveolens | 1 | Ag5G02764 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G004770, COCNU_02G008420, COCNU_03G010600 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703335, gene-LOC103709386, gene-LOC108511554 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.3119.V1.1, AsparagusV1_04.2511.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G07159, Ftri17G17993 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G78530.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019485m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g33620.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g058100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0835 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0958 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g11940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g21740 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9281 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.1343, evm.TU.LG05.1352, evm.TU.LG05.1362 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00024900, Pov_00025241 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09871, Lb2G11177, Lb4G23198 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.22, BH02.16, BH02.4341, CH02.12 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0000050, gene-QOZ80_1AG0044410 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0252000.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_051966, gene-QYE76_057379 |
| Poaceae | Oryza coarctata | 5 | Oco01G006570, Oco01G028370, Oco02G006800, Oco02G029440 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g14510.1, LOC_Os01g68870.2, LOC_Os02g10100.1 |
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_03G001000, gene-BS78_03G380900, gene-BS78_K129000 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604095 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G002630, Chr05G031800, Chr0G014440, Chr21G016670 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G298000, Tel3E01G671400, Tel6E01G334200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG022900, gene_TRIDC3AG060040 ... |
| Poaceae | Triticum aestivum | 12 | TraesCS2D02G034200.1, TraesCS2D02G297600.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb118740_P002, Zm00001eb143420_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44091 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11802, Zma_g15121, Zma_g7148 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG09.1126, evm.TU.LG13.1621, evm.TU.LG21.1059 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g04120 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.148 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11119 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-856 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10641 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.93 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013983 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9115 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15338 |
| Salicaceae | Populus euphratica | 2 | populus_peu00697, populus_peu17754 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610707, gene-LOC132617822 |
| Solanaceae | Solanum chilense | 1 | SOLCI002356300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023948, gene-LOC107029631 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11425, gene_6949 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G0024, TC12G2063 |
| Zosteraceae | Zostera marina | 1 | Zosma04g01550.v3.1 |