Basic Information
Locus ID:
gene-BS78_04G070100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5682313 | 5684391 | - | gene-BS78_04G070100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 72,007.60 Da | 39.34 | 91.30 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 200 | 243 | 3.26596E-6 | IPR018392 |
| Pfam | PF01476 | LysM domain | 206 | 244 | 1.9E-6 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 421 | 664 | 1.2E-33 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 403 | 666 | 1.22E-54 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 200 | 244 | 4.45E-5 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 350 | 456 | 8.5E-10 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 196 | 251 | 1.5E-8 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 457 | 679 | 7.7E-50 | - |
| SMART | SM00257 | LysM_2 | 200 | 244 | 4.0E-4 | IPR018392 |
| SMART | SM00257 | LysM_2 | 132 | 180 | 5.4 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 199 | 243 | 11.262578 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 328 | 675 | 29.361277 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 280 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_025812004.1 | protein LYK5 [Panicum hallii] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6RXM9 | Protein LYK5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology