Basic Information
Locus ID:
gene-BS78_04G068400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5538955 | 5546278 | + | gene-BS78_04G068400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 77,411.04 Da | 42.18 | 91.04 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 415 | 686 | 3.58379E-90 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 413 | 683 | 1.2E-44 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 164 | 186 | 0.65 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 94 | 151 | 4.2E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 67 | 2.5E-6 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 388 | 683 | 1.5E-76 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 34 | 248 | 1.11E-44 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 487 | 707 | 9.3E-60 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 253 | 5.8E-52 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 376 | 486 | 6.8E-28 | - |
| SMART | SM00369 | LRR_typ_2 | 162 | 185 | 88.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 138 | 161 | 49.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 186 | 208 | 59.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 92 | 120 | 20.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 409 | 686 | 38.025421 | IPR000719 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 95 | 108 | 9.1E-6 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 162 | 175 | 9.1E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 287 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22130.1 | STRUBBELIG-receptor family 8. | 0 |
| RefSeq | XP_039788537.1 | protein STRUBBELIG-RECEPTOR FAMILY 8-like [Panicum virgatum] | 0 |
| Q6R2J8 | Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana OX=3702 GN=SRF8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0WPY6 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG246200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology