Basic Information
Locus ID:
gene-BS78_04G061400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4949899 | 4953947 | + | gene-BS78_04G061400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 34,438.66 Da | 52.49 | 61.90 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 4.1E-80 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 7.8E-35 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 6 | 107 | 1.3E-43 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 311 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_039798599.1 | ubiquitin fusion degradation protein 1 homolog isoform X1 [Panicum virgatum] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A811Q6P1 | Ubiquitin fusion degradation protein 1 homolog OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS35388 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology