Basic Information
Locus ID:
gene-BS78_04G059500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 4743889 | 4748727 | + | gene-BS78_04G059500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.66 | 41,926.16 Da | 51.59 | 76.85 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 343 | 385 | 2.1443E-23 | - |
| Pfam | PF00627 | UBA/TS-N domain | 169 | 205 | 3.9E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 44 | 96 | 4.0E-7 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 346 | 382 | 2.1E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 265 | 320 | 3.7E-20 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 261 | 328 | 1.96E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 162 | 215 | 3.88E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 42 | 113 | 6.02E-12 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 330 | 388 | 1.3E-14 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 34 | 97 | 2.4E-13 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 338 | 386 | 8.0E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 254 | 320 | 2.7E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 160 | 210 | 2.5E-20 | - |
| SMART | SM00165 | uba_6 | 347 | 384 | 1.2E-9 | IPR015940 |
| SMART | SM00727 | CBM | 263 | 306 | 0.0035 | IPR006636 |
| SMART | SM00165 | uba_6 | 167 | 207 | 1.5E-6 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 41 | 390 | 8.0E-105 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 166 | 208 | 12.498699 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 345 | 385 | 15.342157 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 43 | 99 | 11.986567 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 291 | 313 | 1.5E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 373 | 388 | 1.5E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 341 | 357 | 1.5E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 358 | 372 | 1.5E-28 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 100 | 121 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_008677246.1 | uncharacterized protein LOC100282427 isoform X2 [Zea mays] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A811PPS2 | Ubiquitin receptor RAD23 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS32031 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology