Basic Information
Locus ID:
gene-BS78_04G043200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3472919 | 3476032 | - | gene-BS78_04G043200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 103,713.34 Da | 42.47 | 105.73 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 83 | 4.8E-5 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 286 | 345 | 9.9E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 503 | 562 | 5.6E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 674 | 949 | 1.1E-38 | IPR000719 |
| SUPERFAMILY | SSF52047 | RNI-like | 86 | 302 | 3.3E-37 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 665 | 951 | 8.63E-68 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 253 | 564 | 1.65E-62 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 747 | 959 | 8.9E-53 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 640 | 746 | 1.1E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 156 | 8.8E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 157 | 249 | 1.0E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 389 | 602 | 4.1E-53 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 250 | 388 | 2.9E-46 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 356 | 380 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 477 | 501 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 284 | 307 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 211 | 235 | 160.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 672 | 955 | 9.6E-34 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 525 | 549 | 27.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 135 | 154 | 180.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 308 | 331 | 12.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 672 | 955 | 35.97599 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 791 | 803 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_039787749.1 | leucine-rich repeat receptor-like kinase protein THICK TASSEL DWARF1 [Panicum virgatum] | 0 |
| P0DL10 | Leucine-rich repeat receptor-like kinase protein THICK TASSEL DWARF1 OS=Zea mays OX=4577 GN=TD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0WIB8 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG019500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6359 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049210 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1200.V1.1 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020657 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.3016, CH06.1251 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G043200, gene-BS78_K002900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G890400 |
| Poaceae | Triticum aestivum | 1 | TraesCSU02G171600.1.cds1 |