Basic Information
Locus ID:
gene-BS78_04G039900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Universal stress protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3204351 | 3208991 | + | gene-BS78_04G039900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 94,298.25 Da | 54.70 | 77.48 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 45 | 197 | 1.34788E-56 | - |
| CDD | cd14066 | STKc_IRAK | 537 | 792 | 2.75981E-84 | - |
| Pfam | PF00069 | Protein kinase domain | 533 | 791 | 1.1E-38 | IPR000719 |
| Pfam | PF00582 | Universal stress protein family | 45 | 172 | 5.8E-10 | IPR006016 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 513 | 794 | 2.26E-67 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 45 | 172 | 3.52E-13 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 511 | 603 | 1.7E-25 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 43 | 196 | 2.5E-14 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 604 | 800 | 1.5E-46 | - |
| SMART | SM00220 | serkin_6 | 531 | 803 | 9.6E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 531 | 803 | 36.442413 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 649 | 661 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 804 | 829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 442 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78940.3 | - | 0 |
| RefSeq | XP_034581933.1 | U-box domain-containing protein 52-like isoform X1 [Setaria viridis] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835EDG2 | Protein kinase domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_046473 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_13G001910 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.388, BH07.499, CH03.4432 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0101760, gene-QOZ80_2BG0155160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0560490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020520 |
| Poaceae | Oryza coarctata | 1 | Oco04G002580 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g05820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G039900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202696 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G272700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG016320, gene_TRIDC6BG021960 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G122700.2, TraesCS6B02G150900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb207960_P003 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12201 |