Basic Information
Locus ID:
gene-BS78_04G033600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
DEAD/DEAH box helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 2636284 | 2647196 | - | gene-BS78_04G033600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 134,645.77 Da | 47.66 | 76.63 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 632 | 764 | 1.90319E-70 | - |
| CDD | cd17920 | DEXHc_RecQ | 431 | 631 | 2.8974E-101 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 445 | 611 | 5.4E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 766 | 841 | 1.1E-15 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 998 | 1064 | 6.7E-15 | IPR002121 |
| Pfam | PF09382 | RQC domain | 848 | 934 | 3.8E-17 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 648 | 754 | 1.8E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 630 | 889 | 6.5E-59 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 995 | 1072 | 5.67E-16 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 418 | 773 | 1.11E-43 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 988 | 1074 | 6.5E-22 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 632 | 844 | 8.0E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 408 | 631 | 3.3E-91 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 848 | 960 | 6.9E-18 | IPR036388 |
| SMART | SM00341 | hrdc7 | 992 | 1074 | 5.3E-8 | IPR002121 |
| SMART | SM00490 | helicmild6 | 674 | 755 | 8.8E-29 | IPR001650 |
| SMART | SM00956 | RQC_2 | 850 | 962 | 8.8E-17 | IPR018982 |
| SMART | SM00487 | ultradead3 | 439 | 640 | 1.8E-33 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 436 | 901 | 1.4E-163 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 451 | 624 | 22.429993 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 649 | 803 | 20.796371 | IPR001650 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 664 | 699 | 9.238918 | IPR001763 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 992 | 1074 | 19.348028 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 563 | 572 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1133 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_034597887.1 | ATP-dependent DNA helicase Q-like 4A [Setaria viridis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6WJ29 | DNA helicase OS=Setaria viridis OX=4556 GN=SEVIR_1G091300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology