Basic Information
Locus ID:
gene-BS78_04G024000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1715476 | 1717002 | + | gene-BS78_04G024000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 56,041.78 Da | 53.60 | 82.74 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 332 | 506 | 2.06218E-103 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 16 | 98 | 1.9E-8 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 330 | 435 | 1.4E-15 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 332 | 462 | 2.35E-18 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 5 | 130 | 4.0E-22 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 318 | 508 | 1.6E-68 | - |
| SMART | SM00232 | pad1_6 | 326 | 459 | 7.5E-10 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 331 | 462 | 24.069853 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 167 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_034597004.1 | AMSH-like ubiquitin thioesterase 3 isoform X2 [Setaria viridis] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6UIS8 | MPN domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_5G179300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology