Basic Information
Locus ID:
gene-BS78_04G012100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 896565 | 900138 | + | gene-BS78_04G012100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 113,243.60 Da | 33.83 | 95.33 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 790 | 1056 | 1.44084E-97 | - |
| Pfam | PF00069 | Protein kinase domain | 785 | 1053 | 1.4E-41 | IPR000719 |
| Pfam | PF13516 | Leucine Rich repeat | 321 | 340 | 1.5 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 610 | 630 | 1.9 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 473 | 493 | 0.34 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 200 | 658 | 1.7E-62 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 770 | 1055 | 6.07E-76 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 58 | 287 | 4.42E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 149 | 366 | 7.8E-46 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 34 | 148 | 2.9E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 367 | 683 | 5.3E-86 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 761 | 859 | 8.9E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 860 | 1074 | 2.5E-58 | - |
| SMART | SM00369 | LRR_typ_2 | 273 | 296 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 152 | 175 | 230.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 784 | 1055 | 2.6E-37 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 101 | 125 | 21.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 471 | 495 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 297 | 321 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 393 | 416 | 320.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 608 | 632 | 6.7 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 784 | 1055 | 37.799274 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 904 | 916 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 790 | 812 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 608 | 621 | 8.5E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 498 | 511 | 8.5E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02220.1 | phytosulfokin receptor 1. Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). | 0 |
| RefSeq | XP_025804716.1 | phytosulfokine receptor 1-like [Panicum hallii] | 0 |
| Q9ZVR7 | Phytosulfokine receptor 1 OS=Arabidopsis thaliana OX=3702 GN=PSKR1 PE=1 SV=4 | 0 | |
| TrEMBL | A0A2T7F0X9 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G011300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0099290, gene-QOZ80_2BG0152720 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0546030.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_019570, gene-QYE76_019571 |
| Poaceae | Oryza coarctata | 2 | Oco03G000770, Oco04G000710 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g02490.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G012100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201128 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G117700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG005390, gene_TRIDC6BG007810 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G044700.1.cds1, TraesCS6B02G061000.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb229960_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52092 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12066 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21260 |