Basic Information
Locus ID:
gene-BS78_04G002400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 167863 | 178525 | - | gene-BS78_04G002400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 198,653.66 Da | 53.25 | 85.13 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1402 | 1829 | 3.58787E-120 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1449 | 1834 | 4.1E-81 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 130 | 598 | 2.34E-38 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1395 | 1827 | 5.36E-96 | IPR035983 |
| Gene3D | G3DSA:1.25.10.10 | - | 134 | 603 | 8.4E-48 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1706 | 1832 | 1.4E-31 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1342 | 1595 | 8.6E-43 | - |
| SMART | SM00119 | hect_3 | 1416 | 1834 | 2.0E-80 | IPR000569 |
| SMART | SM00185 | arm_5 | 292 | 330 | 20.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 249 | 289 | 150.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 162 | 207 | 13.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1442 | 1834 | 56.474857 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 934 | 1028 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 934 | 956 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 995 | 1018 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1079 | 1105 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_025807197.1 | LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL3 [Panicum hallii] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7F0L1 | HECT-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G001600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology