Basic Information
Locus ID:
gene-BS78_04G002200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 161951 | 165488 | - | gene-BS78_04G002200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 33,385.11 Da | 47.03 | 105.03 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 48 | 279 | 2.11E-30 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 38 | 314 | 1.2E-47 | IPR011989 |
| SMART | SM00185 | arm_5 | 210 | 248 | 20.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 167 | 207 | 150.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 80 | 125 | 13.0 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.2 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_039787781.1 | E3 ubiquitin-protein ligase UPL3-like [Panicum virgatum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0WQ36 | HECT-type E3 ubiquitin transferase OS=Panicum virgatum OX=38727 GN=PVAP13_1NG036873 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology