Basic Information
Locus ID:
gene-BS78_04G000900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 85074 | 87683 | + | gene-BS78_04G000900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 55,219.23 Da | 61.51 | 89.80 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 257 | 304 | 1.26167E-11 | - |
| Pfam | PF12906 | RING-variant domain | 257 | 303 | 8.1E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 253 | 307 | 2.21E-11 | - |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 342 | 479 | 9.42E-5 | IPR036259 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 239 | 311 | 1.6E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 256 | 304 | 1.1E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 249 | 310 | 18.620148 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 70 | - | - |
| Coils | Coil | Coil | 230 | 250 | - | - |
| Coils | Coil | Coil | 158 | 178 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034587756.1 | uncharacterized protein LOC117850076 isoform X1 [Setaria viridis] | 0 |
| TrEMBL | A0A4U6W513 | RING-CH-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G000200v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology