Basic Information
Locus ID:
gene-BS78_04G000800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
UBA1
Description:
Belongs to the ubiquitin-activating E1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 74763 | 80724 | + | gene-BS78_04G000800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 112,654.04 Da | 35.26 | 84.80 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01491 | Ube1_repeat1 | 47 | 419 | 5.52327E-144 | - |
| CDD | cd01490 | Ube1_repeat2 | 450 | 962 | 0.0 | - |
| Pfam | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain | 210 | 279 | 1.8E-25 | IPR032418 |
| Pfam | PF00899 | ThiF family | 49 | 431 | 2.4E-22 | IPR000594 |
| Pfam | PF00899 | ThiF family | 452 | 904 | 8.3E-57 | IPR000594 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 592 | 844 | 4.7E-81 | IPR019572 |
| Pfam | PF09358 | Ubiquitin fold domain | 915 | 1004 | 1.9E-25 | IPR018965 |
| Pfam | PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle | 281 | 350 | 2.3E-21 | IPR032420 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 426 | 899 | 2.65E-108 | IPR035985 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 42 | 416 | 1.44E-89 | IPR035985 |
| Gene3D | G3DSA:3.40.50.12550 | - | 156 | 442 | 9.4E-106 | - |
| Gene3D | G3DSA:1.10.10.2660 | - | 577 | 851 | 2.2E-170 | IPR042063 |
| Gene3D | G3DSA:3.40.50.720 | - | 449 | 902 | 2.2E-170 | - |
| Gene3D | G3DSA:3.10.290.60 | - | 917 | 1007 | 1.5E-23 | IPR038252 |
| Gene3D | G3DSA:3.50.50.80 | - | 39 | 155 | 5.7E-34 | IPR042449 |
| Gene3D | G3DSA:2.40.30.180 | - | 198 | 278 | 9.4E-106 | IPR042302 |
| SMART | SM00985 | UBA_e1_C_a_2 | 882 | 1004 | 6.6E-52 | IPR018965 |
| TIGRFAM | TIGR01408 | Ube1: ubiquitin-activating enzyme E1 | 450 | 1009 | 4.9E-269 | IPR018075 |
| ProSitePatterns | PS00536 | Ubiquitin-activating enzyme signature 1. | 394 | 402 | - | IPR018074 |
| ProSitePatterns | PS00865 | Ubiquitin-activating enzyme active site. | 584 | 592 | - | IPR033127 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 69 | 93 | 2.6E-65 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 172 | 199 | 2.6E-65 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 499 | 524 | 2.6E-65 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 452 | 475 | 2.6E-65 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 653 | 680 | 2.6E-65 | IPR000011 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30110.1 | ubiquitin-activating enzyme 1. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling. | 0 |
| RefSeq | XP_034607235.1 | ubiquitin-activating enzyme E1 2 [Setaria viridis] | 0 |
| P31251 | Ubiquitin-activating enzyme E1 2 OS=Triticum aestivum OX=4565 GN=UBA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6TEN1 | E1 ubiquitin-activating enzyme OS=Setaria viridis OX=4556 GN=SEVIR_8G022000v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology