Basic Information
Locus ID:
gene-BS78_03G420900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 47825664 | 47829512 | - | gene-BS78_03G420900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.81 | 102,110.52 Da | 51.21 | 60.73 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 139 | 225 | 3.9612E-30 | - |
| Pfam | PF00855 | PWWP domain | 139 | 225 | 6.2E-13 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 134 | 250 | 5.6E-24 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 128 | 232 | 1.2E-19 | - |
| SMART | SM00293 | PWWP_4 | 139 | 200 | 4.6E-7 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 141 | 202 | 12.721613 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 606 | 645 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 785 | 799 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 666 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 605 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 406 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_008656837.1 | uncharacterized protein LOC103636254 [Zea mays] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811NP74 | PWWP domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS18788 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology