Basic Information
Locus ID:
gene-BS78_03G418900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 47665702 | 47669367 | + | gene-BS78_03G418900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 51,456.43 Da | 52.84 | 72.31 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 187 | 446 | 9.20106E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 321 | 361 | 0.0031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 410 | 446 | 3.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 316 | 3.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 146 | 447 | 1.37E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 105 | 448 | 7.8E-121 | IPR015943 |
| SMART | SM00320 | WD40_4 | 193 | 233 | 0.0055 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 361 | 1.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 316 | 3.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 364 | 404 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 236 | 273 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 446 | 5.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 149 | 190 | 160.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 325 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 316 | 10.653776 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 414 | 447 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 414 | 447 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 326 | 370 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 201 | 242 | 9.004632 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 433 | 447 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13840.1 | FIZZY-related 3. | 0 |
| RefSeq | XP_008672158.1 | uncharacterized protein LOC100193750 isoform X1 [Zea mays] | 0 |
| A0A396ISC0 | B-type cell cycle switch protein ccs52B OS=Medicago truncatula OX=3880 GN=CCS52B PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D6N092 | Fizzy-related protein OS=Zea mays OX=4577 GN=100193750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology