Basic Information
Locus ID:
gene-BS78_03G395500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 46038854 | 46039639 | - | gene-BS78_03G395500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 28,039.28 Da | 67.60 | 70.00 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 175 | 226 | 6.4E-11 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 172 | 232 | 3.28E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 238 | 6.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 176 | 225 | 9.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 176 | 226 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 261 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025819298.1 | uncharacterized protein LOC112895548 [Panicum hallii] | 0 |
| TrEMBL | A0A3L6STZ4 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM07G33970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH02.4430, AH02.4436, BH02.4470, BH02.4476, CH02.4517 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G395500 |
| Poaceae | Zea mays | 7 | Zm00001eb141740_P001, Zm00001eb141780_P001 ... |