Basic Information
Locus ID:
gene-BS78_03G384700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 45186473 | 45188471 | - | gene-BS78_03G384700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 39,646.71 Da | 44.41 | 81.52 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 327 | 367 | 3.5E-6 | IPR002893 |
| SUPERFAMILY | SSF81383 | F-box domain | 39 | 93 | 1.3E-7 | IPR036047 |
| SUPERFAMILY | SSF81901 | HCP-like | 113 | 225 | 4.84E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 326 | 373 | 5.58E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 68 | 297 | 6.3E-17 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 316 | 370 | 3.4E-9 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 325 | 367 | 11.110068 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_039812977.1 | F-box protein At1g67340-like [Panicum virgatum] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7DCD7 | MYND-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G037900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology