Basic Information
Locus ID:
gene-BS78_03G381200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 44940618 | 44942481 | - | gene-BS78_03G381200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 32,096.31 Da | 65.03 | 47.75 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 245 | 282 | 5.79536E-10 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 244 | 288 | 9.0E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 244 | 289 | 5.89E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 225 | 293 | 3.5E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 245 | 282 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 245 | 283 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 188 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 148 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_002458987.1 | transcription elongation factor SPT5 [Sorghum bicolor] | 0 |
| TrEMBL | A0A1E5VXQ1 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0009104 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology