Basic Information
Locus ID:
gene-BS78_03G342100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 42101405 | 42110822 | - | gene-BS78_03G342100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 82,459.23 Da | 47.43 | 82.83 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 273 | 379 | 1.66279E-20 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 553 | 598 | 2.9E-8 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 279 | 391 | 3.2E-9 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 662 | 738 | 4.47E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 160 | 415 | 4.74E-23 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 536 | 599 | 1.5E-12 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 661 | 730 | 6.8E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 158 | 419 | 8.7E-29 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 532 | 605 | 6.1E-8 | - |
| SMART | SM00358 | DRBM_3 | 662 | 728 | 2.4E-5 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 535 | 599 | 5.3E-6 | IPR014720 |
| SMART | SM00577 | forpap2 | 222 | 398 | 2.0E-10 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 534 | 600 | 11.334196 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 163 | 411 | 18.525326 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 657 | 729 | 12.3538 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 510 | - | - |
| Coils | Coil | Coil | 581 | 601 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_021311283.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Sorghum bicolor] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A1B6Q729 | protein-serine/threonine phosphatase OS=Sorghum bicolor OX=4558 GN=SORBI_3003G361800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology