Basic Information
Locus ID:
gene-BS78_03G337500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 41762240 | 41766443 | - | gene-BS78_03G337500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 25,852.19 Da | 43.46 | 64.29 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 126 | 178 | 2.24015E-10 | - |
| Pfam | PF12906 | RING-variant domain | 126 | 177 | 1.4E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 180 | 9.18E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 185 | 6.9E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 125 | 178 | 6.1E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 118 | 184 | 17.528868 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_039849978.1 | uncharacterized protein LOC120708669 [Panicum virgatum] | 0 |
| TrEMBL | A0A3L6SGH1 | RING-CH-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM07G28680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology