Basic Information
Locus ID:
gene-BS78_03G310400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ubiquitin associated domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 39582826 | 39585635 | - | gene-BS78_03G310400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 31,788.17 Da | 42.05 | 100.28 | 0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00627 | UBA/TS-N domain | 248 | 282 | 3.4E-9 | IPR015940 |
| Pfam | PF01694 | Rhomboid family | 47 | 187 | 6.9E-7 | IPR022764 |
| SUPERFAMILY | SSF46934 | UBA-like | 237 | 285 | 2.3E-11 | IPR009060 |
| SUPERFAMILY | SSF144091 | Rhomboid-like | 26 | 186 | 2.75E-16 | IPR035952 |
| Gene3D | G3DSA:1.20.1540.10 | - | 16 | 189 | 1.7E-8 | IPR035952 |
| Gene3D | G3DSA:1.10.8.10 | - | 222 | 287 | 1.1E-11 | - |
| SMART | SM00165 | uba_6 | 247 | 284 | 1.8E-9 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 245 | 285 | 13.944526 | IPR015940 |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56740.1 | Ubiquitin-associated (UBA) protein. | 0 |
| RefSeq | XP_002458654.1 | rhomboid-like protein 20 [Sorghum bicolor] | 0 |
| Q9LET3 | Rhomboid-like protein 20 OS=Arabidopsis thaliana OX=3702 GN=RBL20 PE=2 SV=1 | 0 | |
| TrEMBL | C5XMJ5 | UBA domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G328900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg15822, jg3802 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4574 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022179 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g063060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg58875, Sbi_jg63734 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23157 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012994 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02277, Sgl07425 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014447, gene:ENSEOMG00000031198 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0023060, CQ.Regalona.r1.3BG0023760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30189870 |
| Apiaceae | Apium graveolens | 1 | Ag10G02244 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G016670, COCNU_04G006240 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710331, gene-LOC103713282 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1964.V1.1, AsparagusV1_07.1725.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G24282 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G41160.1, AT3G56740.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10006131m.g.v1.0, Thhalv10017035m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g23460.v2.2, Sp5g05830.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g000480.2N, BniB08g071340.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0890 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1012 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g02640, gene.Cymno04g13310 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0149s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g35240, gene.Thate07g10550 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2634 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00017627 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G07320 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.3612, AH02.880, BH02.1249, BH02.3343, CH02.1374 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0004300, gene-QOZ80_1AG0037050 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0256100.1, HORVU.MOREX.r3.3HG0295590.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016947, gene-QYE76_055907 |
| Poaceae | Oryza coarctata | 4 | Oco01G007520, Oco01G022680, Oco02G007820, Oco02G023410 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g16330.1, LOC_Os01g59160.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G114700, gene-BS78_03G310400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0601766, Pt_Chr0603792, Pt_Chr0603872, Pt_Chr0605522 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G006930, Chr02G026830, Chr03G018300, Chr05G004550 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G320400, Tel3E01G532500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG025770, gene_TRIDC3AG047960 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G185300.1, TraesCS3A02G333400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb128690_P001, Zm00001eb150410_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-24508, nbis-gene-31367, nbis-gene-32507 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11367, Zma_g7358, Zma_g9685 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.380, evm.TU.LG13.1330, evm.TU.LG15.566 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g06960 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.1615, evm.TU.Scaffold_8_RagTag.188 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10148 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10412, nbisL1-mrna-19301 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13543, nbisL1-mrna-17816 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.102, evm.TU.utg000018l.875 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003712, Maker00011921 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13206, nbisL1-mrna-3128 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11414, nbisL1-mrna-12305 |
| Salicaceae | Populus euphratica | 4 | populus_peu10845, populus_peu26279, populus_peu26280 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607342 |
| Solanaceae | Solanum chilense | 1 | SOLCI001149500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002596 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.21132_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1984 |
| Zosteraceae | Zostera marina | 1 | Zosma04g25230.v3.1 |