Basic Information
Locus ID:
gene-BS78_03G297300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 38739584 | 38742590 | - | gene-BS78_03G297300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 69,537.74 Da | 49.94 | 85.90 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 213 | 507 | 2.9E-95 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 132 | 1.3E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 13 | 117 | 4.55E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 13 | 170 | 1.1E-11 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 136 | 5.5E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 213 | 531 | 93.998093 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 100 | 11.088597 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 594 | - | - |
| Coils | Coil | Coil | 592 | 612 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_004970185.1 | BTB/POZ domain-containing protein At5g03250 [Setaria italica] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | K3XQG5 | BTB/POZ domain-containing protein OS=Setaria italica OX=4555 GN=101759219 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology