Basic Information
Locus ID:
gene-BS78_03G296700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 38696366 | 38706739 | - | gene-BS78_03G296700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 140,737.41 Da | 52.13 | 70.10 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 534 | 857 | 2.32801E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1107 | 1216 | 1.07451E-51 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 973 | 1010 | 9.5E-8 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 552 | 935 | 2.1E-67 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1106 | 1206 | 7.5E-15 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 970 | 1022 | 4.78E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 866 | 1262 | 2.9E-52 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 518 | 857 | 1.61E-45 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 505 | 599 | 1.0E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 623 | 713 | 2.4E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 872 | 1263 | 1.6E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 728 | 870 | 7.4E-29 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 966 | 1059 | 6.8E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 973 | 1011 | 2.6E-4 | IPR001841 |
| SMART | SM00487 | ultradead3 | 530 | 836 | 5.7E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1123 | 1206 | 1.2E-17 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 973 | 1012 | 10.586141 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 549 | 819 | 12.451889 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1101 | 1259 | 13.720642 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 988 | 997 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 709 | 723 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_034592714.1 | helicase-like transcription factor CHR28 isoform X3 [Setaria viridis] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811NTM4 | Helicase-like transcription factor CHR28 OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS20124 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology