Basic Information
Locus ID:
gene-BS78_03G294300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 38505715 | 38510182 | - | gene-BS78_03G294300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 64,027.02 Da | 34.90 | 71.86 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 250 | 379 | 2.43949E-39 | IPR033734 |
| CDD | cd09612 | Jacalin | 441 | 567 | 9.38503E-39 | IPR033734 |
| CDD | cd09612 | Jacalin | 22 | 150 | 1.7895E-45 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 22 | 150 | 6.5E-34 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 438 | 567 | 4.1E-26 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 250 | 379 | 1.3E-28 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 235 | 379 | 3.66E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 425 | 567 | 3.66E-38 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 12 | 150 | 3.66E-43 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 229 | 379 | 2.1E-47 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 421 | 567 | 3.6E-48 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 151 | 7.2E-56 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 22 | 152 | 6.1E-44 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 438 | 568 | 8.6E-36 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 250 | 381 | 2.4E-38 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 239 | 381 | 46.968975 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 427 | 568 | 47.090904 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 11 | 152 | 51.095821 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_021312154.1 | jacalin-related lectin 3 [Sorghum bicolor] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811NL12 | LisH domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS20147 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology