Basic Information
Locus ID:
gene-BS78_03G290900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 38193472 | 38217078 | - | gene-BS78_03G290900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 126,724.59 Da | 44.22 | 76.33 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 20 | 143 | 8.63293E-36 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 161 | 489 | 2.49453E-167 | - |
| Pfam | PF00917 | MATH domain | 33 | 145 | 3.0E-17 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 588 | 841 | 1.9E-73 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 163 | 484 | 7.7E-48 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 851 | 1057 | 4.1E-49 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 16 | 149 | 1.19E-37 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 158 | 512 | 5.69E-97 | IPR038765 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 15 | 159 | 7.8E-50 | IPR008974 |
| Gene3D | G3DSA:3.10.20.90 | - | 649 | 766 | 1.6E-40 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 160 | 488 | 6.5E-91 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 767 | 864 | 5.4E-24 | - |
| SMART | SM00061 | math_3 | 20 | 124 | 3.8E-16 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 163 | 487 | 40.460903 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 18 | 143 | 35.195686 | IPR002083 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 164 | 179 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 403 | 420 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_025815032.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Panicum hallii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T8IJY3 | ubiquitinyl hydrolase 1 OS=Panicum hallii OX=206008 GN=PAHAL_5G142300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology