Basic Information
Locus ID:
gene-BS78_03G287700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 37952091 | 37955088 | - | gene-BS78_03G287700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.21 | 25,691.62 Da | 50.38 | 69.18 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 45 | 89 | 1.1969E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 46 | 87 | 7.5E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 43 | 100 | 4.09E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 101 | 1.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 47 | 87 | 1.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 47 | 88 | 13.389211 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 62 | 71 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 134 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004970087.1 | E3 ubiquitin-protein ligase RNF5 [Setaria italica] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | K3XLA9 | RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101755974 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology