Basic Information
Locus ID:
gene-BS78_03G233900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
E3 ubiquitin ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 33617015 | 33629401 | + | gene-BS78_03G233900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 138,754.86 Da | 46.90 | 74.95 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 645 | 804 | 4.18463E-27 | - |
| CDD | cd12108 | Hr-like | 295 | 423 | 2.73759E-17 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1115 | 1158 | 8.78988E-18 | - |
| CDD | cd12108 | Hr-like | 40 | 166 | 8.63723E-33 | - |
| Pfam | PF14599 | Zinc-ribbon | 1163 | 1220 | 1.0E-23 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 987 | 1062 | 4.2E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 292 | 424 | 3.3E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 42 | 168 | 2.6E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 643 | 805 | 4.6E-8 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1053 | 1108 | 3.27E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 979 | 1043 | 4.97E-9 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1114 | 1161 | 2.83E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1111 | 1159 | 2.2E-8 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1187 | 1228 | 4.1E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 35 | 186 | 2.3E-33 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 640 | 861 | 1.6E-25 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 295 | 442 | 3.7E-19 | - |
| SMART | SM00184 | ring_2 | 1116 | 1157 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1052 | 1115 | 29.816021 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 980 | 1049 | 25.774536 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1116 | 1157 | 11.235273 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 877 | 898 | - | - |
| Coils | Coil | Coil | 739 | 759 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_002458337.2 | zinc finger protein BRUTUS isoform X1 [Sorghum bicolor] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A811P0X2 | Zinc finger protein BRUTUS OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS20630 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology