Basic Information
Locus ID:
gene-BS78_03G232800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Telomere stability and silencing
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 33504270 | 33508150 | + | gene-BS78_03G232800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.23 | 47,564.36 Da | 41.62 | 73.51 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13019 | Silencing defective 2 N-terminal ubiquitin domain | 7 | 184 | 1.8E-44 | IPR024974 |
| Pfam | PF13297 | Telomere stability C-terminal | 380 | 439 | 2.0E-26 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 267 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01000.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_025817659.1 | replication stress response regulator SDE2 [Panicum hallii] | 0 |
| Q8K1J5 | Splicing regulator SDE2 OS=Mus musculus OX=10090 GN=Sde2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3HSX1 | Sde2_N_Ubi domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G205400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg2004, jg29447 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1631 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022862 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g003170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg3962, Sbi_jg49175 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6068 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000575 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10916, Sgl16270 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013547, gene:ENSEOMG00000035791 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0002090, CQ.Regalona.r1.2BG0026150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005740 |
| Apiaceae | Apium graveolens | 1 | Ag5G00997 |
| Arecaceae | Cocos nucifera | 1 | scaffold000561G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696901 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2835.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G06469 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G06455.1, AT4G01000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028668m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g00950.v2.2, Sp6g01150.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g056930.2N, BniB08g041210.2N, BniB08g043360.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1259 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1299 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g01750 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0023s00044.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g15000 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6154, nbisL1-mrna-9534 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.708 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016597 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02236, Lb1G03660 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2766, BH02.2849, CH02.3690 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0028750, gene-QOZ80_1BG0078990 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0280450.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_012576, gene-QYE76_054591, gene-QYE76_054599 |
| Poaceae | Oryza coarctata | 2 | Oco01G017390, Oco02G017640 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g48930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G232800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107862, Pt_Chr0602365 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G012590, Chr03G013580, Chr05G021030, Chr08G013740 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G442500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG039680, gene_TRIDC3BG044830 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G266500.1, TraesCS3B02G300000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb156640_P002, Zm00001eb360440_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12577, nbis-gene-26115 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10884, Zma_g8434 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2160, evm.TU.LG06.148 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.601 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21616 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-936 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7400 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.208 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017535 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1705 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5438 |
| Salicaceae | Populus euphratica | 2 | populus_peu27567, populus_peu31564 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645452 |
| Solanaceae | Solanum chilense | 1 | SOLCI004987100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007865 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.28856_chr11_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1952 |
| Zosteraceae | Zostera marina | 1 | Zosma03g16490.v3.1 |