Basic Information
Locus ID:
gene-BS78_03G220200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
JAB1/Mov34/MPN/PAD-1 ubiquitin protease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 32583878 | 32588729 | + | gene-BS78_03G220200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 30,077.16 Da | 46.60 | 71.59 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 96 | 268 | 2.90481E-91 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 95 | 197 | 2.2E-13 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 94 | 225 | 3.4E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 73 | 270 | 3.9E-67 | - |
| SMART | SM00232 | pad1_6 | 93 | 221 | 5.3E-13 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 94 | 222 | 27.433037 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10600.1 | associated molecule with the SH3 domain of STAM 2. | 0 |
| RefSeq | XP_021312347.1 | AMSH-like ubiquitin thioesterase 2 [Sorghum bicolor] | 0 |
| Q6NKP9 | AMSH-like ubiquitin thioesterase 2 OS=Arabidopsis thaliana OX=3702 GN=AMSH2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1B6Q578 | MPN domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G246100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology