Basic Information
Locus ID:
gene-BS78_03G212000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Transcription initiation factor TFIID subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 31870781 | 31874633 | + | gene-BS78_03G212000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 21,807.94 Da | 67.67 | 69.55 | -0.71 |
Protein Domain:
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55300.1 | TBP-associated factor 7. | 0 |
| RefSeq | XP_004969313.1 | transcription initiation factor TFIID subunit 7 [Setaria italica] | 0 |
| B9DG24 | Transcription initiation factor TFIID subunit 7 OS=Arabidopsis thaliana OX=3702 GN=TAF7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811PP84 | TAFII55_N domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS32079 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36150 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16797 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021273 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g078640 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg28720, Sbi_jg28725, Sbi_jg2910, Sbi_jg2921, Sbi_jg2930 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg6835, Seu_jg6953 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005813 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71171, Sgl74753 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014721, gene:ENSEOMG00000030480 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019060, CQ.Regalona.r1.3BG0019670 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30050350, pistato.v30086030 |
| Apiaceae | Apium graveolens | 2 | Ag10G02417, AgUnG01065 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G011280 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103716825, gene-LOC103721202 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.700.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G09674, Ftri12G12246 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G55300.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011786m.g.v1.0, Thhalv10012232m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g40960.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g054300.2N, BniB06g026130.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2349 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G2506 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04050 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0383s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g00070 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.402 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00009317, Pov_00009322, Pov_00020498 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G33210 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2528, BH02.2629, CH02.2862 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0026590, gene-QOZ80_1BG0076880 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0275900.1, HORVU.MOREX.r3.7HG0732830.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_054204, gene-QYE76_054248 |
| Poaceae | Oryza coarctata | 4 | Oco01G015830, Oco02G016140, Oco09G007050, Oco10G007180 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g46020.1, LOC_Os05g28010.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G212000, gene-BS78_08G101300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604951 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr03G012560, Chr05G019570, Chr08G012840 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G397500, Tel7E01G764000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG035030, gene_TRIDC3BG039370 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS3A02G233900.1, TraesCS3A02G234400.3 ... |
| Poaceae | Zea mays | 5 | Zm00001eb059570_P001, Zm00001eb068820_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25911 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10759 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g08750 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.211 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21914 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18406 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7502 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.137 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017636 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6765 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12551 |
| Salicaceae | Populus euphratica | 2 | populus_peu04448, populus_peu35266 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627651 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114076925 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5512 |
| Zosteraceae | Zostera marina | 1 | Zosma03g15250.v3.1 |