Basic Information
Locus ID:
gene-BS78_03G192000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 29851655 | 29854416 | - | gene-BS78_03G192000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 34,587.81 Da | 52.12 | 94.06 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 56 | 107 | 3.90268E-21 | - |
| Pfam | PF12906 | RING-variant domain | 56 | 106 | 2.8E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 111 | 1.59E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 119 | 1.1E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 55 | 107 | 8.0E-20 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 48 | 113 | 21.338055 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 56 | 107 | 8.668251 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_002458145.1 | uncharacterized protein LOC8054370 [Sorghum bicolor] | 0 |
| TrEMBL | A0A835BGW0 | RING-CH-type domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_036515 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology