Basic Information
Locus ID:
gene-BS78_03G187000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 29351060 | 29352100 | - | gene-BS78_03G187000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 24,717.59 Da | 47.23 | 77.77 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 164 | 226 | 6.53236E-19 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 82 | 143 | 5.6E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 163 | 225 | 1.2E-14 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 65 | 226 | 4.12E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 158 | 232 | 1.5E-22 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 76 | 146 | 1.1E-18 | - |
| SMART | SM00054 | efh_1 | 121 | 149 | 0.051 | IPR002048 |
| SMART | SM00054 | efh_1 | 200 | 228 | 7.4E-7 | IPR002048 |
| SMART | SM00054 | efh_1 | 164 | 192 | 7.2E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 83 | 111 | 5.6E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 160 | 195 | 15.182896 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 79 | 114 | 14.48551 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 117 | 152 | 10.747526 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 196 | 231 | 12.78389 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 173 | 185 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 130 | 142 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 92 | 104 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 209 | 221 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 75 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25600.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | NP_001167949.1 | Probable calcium-binding protein CML12-like [Zea mays] | 0 |
| Q5ZD81 | Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica OX=39947 GN=CML12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A835BES1 | Calcium-binding protein CML11 OS=Digitaria exilis OX=1010633 GN=HU200_036466 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology