Basic Information
Locus ID:
gene-BS78_03G161600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 24732295 | 24737666 | + | gene-BS78_03G161600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.04 | 89,820.66 Da | 72.69 | 59.88 | -0.98 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 53 | 4.4425E-4 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 368 | 497 | 7.47995E-62 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 380 | 488 | 2.9E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 173 | 342 | 6.0E-49 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 220 | 505 | 5.96E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 55 | 8.04E-9 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 124 | 358 | 1.3E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 359 | 530 | 7.9E-59 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 63 | 9.6E-6 | - |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.8E-5 | IPR001202 |
| SMART | SM00487 | ultradead3 | 168 | 371 | 3.7E-62 | IPR014001 |
| SMART | SM00490 | helicmild6 | 408 | 488 | 5.1E-35 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 149 | 177 | 11.016736 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 383 | 527 | 25.76083 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 180 | 354 | 29.937149 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.3096 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 300 | 308 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 687 | 722 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 785 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 523 | 810 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 759 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_021311702.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Sorghum bicolor] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1B6Q477 | DEAD-box ATP-dependent RNA helicase 14 OS=Sorghum bicolor OX=4558 GN=SORBI_3003G187400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology