Basic Information
Locus ID:
gene-BS78_03G157100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 23867067 | 23876871 | + | gene-BS78_03G157100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.47 | 105,506.83 Da | 36.64 | 87.62 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 316 | 418 | 8.0E-6 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 451 | 544 | 8.9E-8 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 634 | 904 | 7.7E-44 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 614 | 907 | 1.21E-76 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 708 | 918 | 1.5E-52 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 307 | 422 | 5.4E-6 | IPR038408 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 594 | 707 | 1.1E-32 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 435 | 547 | 3.2E-15 | IPR038408 |
| SMART | SM00220 | serkin_6 | 633 | 907 | 1.2E-29 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 306 | 422 | 10.632142 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 633 | 923 | 36.541351 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 433 | 547 | 15.121983 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 755 | 767 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05200.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 25. Encodes a cysteine-rich receptor-like protein kinase. | 0 |
| RefSeq | XP_034597894.1 | cysteine-rich receptor-like protein kinase 25 [Setaria viridis] | 0 |
| Q0D5R3 | Cysteine-rich receptor-like protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1W0VY38 | Protein kinase domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3003G193400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH02.2073, CH02.2296, CH07.185 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0627900.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G009710, Oco02G010060 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g23970.1, LOC_Os01g38850.1, LOC_Os01g38910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G157100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G017310, Chr03G009290, Chr05G016650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G685700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC6AG056390, gene_TRIDC6AG056400 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3B02G231200.1, TraesCS6A02G378900.1 ... |
| Poaceae | Zoysia japonica | 6 | nbis-gene-21510, nbis-gene-29462, nbis-gene-29465 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g10423, Zma_g7034, Zma_g8087, Zma_g8088, Zma_g8089 |