Basic Information
Locus ID:
gene-BS78_03G149500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19731262 | 19740660 | - | gene-BS78_03G149500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 161,660.48 Da | 41.44 | 109.16 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 267 | 554 | 1.63742E-85 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 884 | 1174 | 1.45164E-73 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1197 | 1417 | 1.67776E-116 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 583 | 790 | 6.06606E-97 | - |
| Pfam | PF00005 | ABC transporter | 1216 | 1364 | 1.1E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 266 | 533 | 2.4E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 887 | 1126 | 5.8E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 612 | 742 | 1.3E-15 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 611 | 804 | 2.46E-50 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 261 | 558 | 2.62E-29 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1190 | 1424 | 9.19E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 886 | 1181 | 2.09E-44 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 602 | 842 | 4.1E-65 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 239 | 563 | 2.4E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1182 | 1436 | 9.2E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 853 | 1180 | 4.2E-51 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1225 | 1410 | 3.2E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 616 | 798 | 1.7E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1199 | 1433 | 17.553822 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 583 | 813 | 20.501652 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 266 | 546 | 30.673386 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 886 | 1162 | 33.04443 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 715 | 729 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_034596572.1 | putative ABC transporter C family member 15 [Setaria viridis] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A4U6UH86 | ABC transporter C family member 15 OS=Setaria viridis OX=4556 GN=SEVIR_5G186700v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology