Basic Information
Locus ID:
gene-BS78_03G143600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14231803 | 14234336 | + | gene-BS78_03G143600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 69,943.07 Da | 56.56 | 73.14 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 293 | 613 | 7.7E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 257 | 651 | 4.64E-117 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 251 | 650 | 1.1E-108 | IPR012334 |
| SMART | SM00710 | pbh1 | 506 | 527 | 2.2 | IPR006626 |
| SMART | SM00710 | pbh1 | 535 | 556 | 4100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 453 | 474 | 140.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 403 | 452 | 560.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 476 | 496 | 2900.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 483 | 496 | - | IPR000743 |
| PRINTS | PR01217 | Proline rich extensin signature | 72 | 88 | 2.6E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 141 | 157 | 2.6E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 92 | 104 | 2.6E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 109 | 130 | 2.6E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 198 | 223 | 2.6E-10 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 167 | 184 | 2.6E-10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 250 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 66 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_008655877.1 | polygalacturonase At1g48100 [Zea mays] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | K7VC52 | Polygalacturonase OS=Zea mays OX=4577 GN=103635108 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology